The new site for AMPer: A Database and an Automated Discovery Tool for Antimicrobial Peptides.
Comments to: Chris Fjell (email@example.com), updated February 2007
AMPer: A Database and an Automated Discovery Tool for Gene-Coded Antimicrobial Peptides The AMPer paper is here.
A short how-to page is here.
Download all HMM models to scan sequence locally here.
Download all clusters to scan sequence locally here.
Swiss-Prot/TrEMBL annotations (now obsolete) for these sequences are at here.
Get all Swiss-Prot/TrEMBL annotations (now obsolete) for these sequences here.
View all Uniprot proteins believed to contain AMPs based here.
View all mature peptides or propeptides.
View cluster from mature peptide or propeptide sequences.
Enter sequence to scan for AMPs here
The original set of AMPs used in this work were obtained from Prof. Alessandro Tossi's AMSdb at the University of Trieste, Italy
Other on-line resources for AMPs are listed here.
Bovine sequence analysis Bovine Known AMPs are here
Bovine Predicted AMPs from dbEST are here (filtered for Q, P etc)
Bovine Predicted AMPs from dbEST are here (unfiltered - all of them)
Bovine Predicted AMP from genome sequence are here (unfiltered - all of them)